IL_7TOR_217

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

7TOR|1|A28S|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_217 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.3126

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7TOR|1|A28S|G|4347
7TOR|1|A28S|A|4348
7TOR|1|A28S|C|4349
7TOR|1|A28S|C|4350
*
7TOR|1|A28S|G|4364
7TOR|1|A28S|C|4365

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

60S ribosomal protein L13

Chain AL18

eL18

Chain AL28

60S ribosomal protein L27a

Chain AL42

eL42