IL_7TOR_221

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7TOR|1|A28S|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_221 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.2165

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7TOR|1|A28S|G|4405
7TOR|1|A28S|U|4406
7TOR|1|A28S|G|4407
*
7TOR|1|A28S|U|4435
7TOR|1|A28S|U|4436
7TOR|1|A28S|U|4437
7TOR|1|A28S|U|4438
7TOR|1|A28S|U|4439

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL10

Ribosomal protein L10