IL_7TOR_238

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7TOR|1|A28S|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_238 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2205

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7TOR|1|A28S|G|4680
7TOR|1|A28S|A|4681
7TOR|1|A28S|U|4682
7TOR|1|A28S|U|4683
7TOR|1|A28S|A|4684
7TOR|1|A28S|U|4685
*
7TOR|1|A28S|A|4705
7TOR|1|A28S|G|4706
7TOR|1|A28S|A|4707
7TOR|1|A28S|A|4708
7TOR|1|A28S|U|4709
7TOR|1|A28S|C|4710

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

uL13

Chain AL40

eL40