IL_7TOR_277

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7TOR|1|A28S|G|748, 7TOR|1|A28S|U|914, 7TOR|1|A28S|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_277 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2563

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7TOR|1|A28S|G|745
7TOR|1|A28S|A|746
7TOR|1|A28S|A|747
7TOR|1|A28S|G|748
7TOR|1|A28S|G|749
7TOR|1|A28S|U|750
7TOR|1|A28S|G|751
7TOR|1|A28S|G|752
*
7TOR|1|A28S|U|911
7TOR|1|A28S|G|912
7TOR|1|A28S|U|913
7TOR|1|A28S|U|914
7TOR|1|A28S|A|915
7TOR|1|A28S|C|916
7TOR|1|A28S|A|917
7TOR|1|A28S|G|918
7TOR|1|A28S|C|919

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL14

60S ribosomal protein L14

Chain AL20

eL20

Chain ALP0

60S acidic ribosomal protein P0