IL_7TOS_013

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_013 not in the Motif Atlas

Geometric match to IL_3IWN_005

Geometric discrepancy: 0.2883

The information below is about IL_3IWN_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

7TOS|1|16S|G|203
7TOS|1|16S|G|204
7TOS|1|16S|A|205
7TOS|1|16S|C|206
*
7TOS|1|16S|G|213
7TOS|1|16S|C|214

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains