IL_7TOS_016

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_016 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1644

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7TOS|1|16S|G|292
7TOS|1|16S|G|293
*
7TOS|1|16S|U|304
7TOS|1|16S|G|305
7TOS|1|16S|A|306
7TOS|1|16S|C|307
7TOS|1|16S|C|308

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S12

30S ribosomal protein S12

Chain S16

30S ribosomal protein S16