IL_7TOS_022

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7TOS|1|16S|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1423

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7TOS|1|16S|G|446
7TOS|1|16S|G|447
7TOS|1|16S|A|448
7TOS|1|16S|G|449
7TOS|1|16S|G|450
*
7TOS|1|16S|C|483
7TOS|1|16S|G|484
7TOS|1|16S|U|485
7TOS|1|16S|U|486
7TOS|1|16S|A|487
7TOS|1|16S|C|488

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S04

30S ribosomal protein S4

Chain S16

30S ribosomal protein S16