IL_7TOS_031

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_031 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.1013

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

7TOS|1|16S|G|654
7TOS|1|16S|A|655
*
7TOS|1|16S|U|751
7TOS|1|16S|G|752
7TOS|1|16S|A|753
7TOS|1|16S|C|754

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S08

30S ribosomal protein S8

Chain S15

30S ribosomal protein S15