IL_7TOS_037
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_037 not in the Motif Atlas
- Homologous match to IL_5J7L_037
- Geometric discrepancy: 0.0817
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
7TOS|1|16S|C|779
7TOS|1|16S|A|780
7TOS|1|16S|A|781
7TOS|1|16S|A|782
7TOS|1|16S|C|783
*
7TOS|1|16S|G|799
7TOS|1|16S|G|800
7TOS|1|16S|U|801
7TOS|1|16S|A|802
7TOS|1|16S|G|803
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain S11
- 30S ribosomal protein S11
- Chain S21
- Ribosomal protein S21
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