IL_7TOS_051

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_051 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2753

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

7TOS|1|16S|C|1129
7TOS|1|16S|A|1130
7TOS|1|16S|G|1131
7TOS|1|16S|C|1132
*
7TOS|1|16S|G|1142
7TOS|1|16S|G|1143

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S09

30S ribosomal protein S9