IL_7TOS_074

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_074 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.2512

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7TOS|1|23S|C|274
7TOS|1|23S|C|275
7TOS|1|23S|U|276
7TOS|1|23S|G|277
7TOS|1|23S|A|278
7TOS|1|23S|A|279
7TOS|1|23S|U|280
7TOS|1|23S|C|281
*
7TOS|1|23S|G|359
7TOS|1|23S|U|360
7TOS|1|23S|G|361
7TOS|1|23S|A|362
7TOS|1|23S|G|363

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains