IL_7TOS_102

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

7TOS|1|23S|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_102 not in the Motif Atlas

Geometric match to IL_7RQB_041

Geometric discrepancy: 0.1354

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

7TOS|1|23S|G|1031
7TOS|1|23S|A|1032
7TOS|1|23S|U|1033
7TOS|1|23S|G|1034
*
7TOS|1|23S|C|1121
7TOS|1|23S|G|1122
7TOS|1|23S|C|1123

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain L16

50S ribosomal protein L16

Chain L36

50S ribosomal protein L36