IL_7TOS_106

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

7TOS|1|23S|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_106 not in the Motif Atlas

Geometric match to IL_4LFB_024

Geometric discrepancy: 0.1926

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

7TOS|1|23S|G|1087
7TOS|1|23S|A|1088
7TOS|1|23S|A|1089
7TOS|1|23S|A|1090
*
7TOS|1|23S|U|1101
7TOS|1|23S|C|1102

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L11

50S ribosomal protein L11

Chain L36

50S ribosomal protein L36