IL_7TOS_108

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

7TOS|1|23S|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_108 not in the Motif Atlas

Geometric match to IL_5J7L_287

Geometric discrepancy: 0.149

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

7TOS|1|23S|G|1202
7TOS|1|23S|U|1203
7TOS|1|23S|A|1204
7TOS|1|23S|A|1205
7TOS|1|23S|G|1206
*
7TOS|1|23S|U|1240
7TOS|1|23S|A|1241
7TOS|1|23S|U|1242
7TOS|1|23S|C|1243

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L15

50S ribosomal protein L15