IL_7TOS_110
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_110 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.0945
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7TOS|1|23S|A|1262
7TOS|1|23S|U|1263
7TOS|1|23S|A|1264
7TOS|1|23S|A|1265
7TOS|1|23S|G|1266
7TOS|1|23S|U|1267
7TOS|1|23S|A|1268
7TOS|1|23S|A|1269
*
7TOS|1|23S|U|2011
7TOS|1|23S|G|2012
7TOS|1|23S|A|2013
7TOS|1|23S|A|2014
7TOS|1|23S|A|2015
7TOS|1|23S|U|2016
7TOS|1|23S|U|2017
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L04
- 50S ribosomal protein L4
- Chain L22
- 50S ribosomal protein L22
- Chain L32
- 50S ribosomal protein L32
- Chain PR
- PR20, ALS/FTD dipeptide repeat protein
Coloring options: