IL_7TOS_125

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_125 not in the Motif Atlas

Geometric match to IL_5J7L_304

Geometric discrepancy: 0.1023

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7TOS|1|23S|G|1651
7TOS|1|23S|A|1652
7TOS|1|23S|G|1653
7TOS|1|23S|A|1654
7TOS|1|23S|A|1655
7TOS|1|23S|C|1656
*
7TOS|1|23S|G|2004
7TOS|1|23S|A|2005
7TOS|1|23S|C|2006

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L17

50S ribosomal protein L17