IL_7TOS_129

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7TOS|1|23S|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_129 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0928

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TOS|1|23S|C|1686
7TOS|1|23S|G|1687
7TOS|1|23S|U|1688
7TOS|1|23S|A|1689
7TOS|1|23S|A|1690
7TOS|1|23S|C|1691
*
7TOS|1|23S|G|1696
7TOS|1|23S|G|1697
7TOS|1|23S|A|1698
7TOS|1|23S|G|1699
7TOS|1|23S|A|1700
7TOS|1|23S|A|1701
7TOS|1|23S|G|1702

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain L02

50S ribosomal protein L2