IL_7TOS_140
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 7TOS|1|23S|A|1938, 7TOS|1|23S|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_140 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1656
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
7TOS|1|23S|C|1934
7TOS|1|23S|G|1935
7TOS|1|23S|A|1936
7TOS|1|23S|A|1937
7TOS|1|23S|A|1938
7TOS|1|23S|U|1939
7TOS|1|23S|U|1940
7TOS|1|23S|C|1941
7TOS|1|23S|C|1942
7TOS|1|23S|U|1943
7TOS|1|23S|U|1944
7TOS|1|23S|G|1945
*
7TOS|1|23S|C|1961
7TOS|1|23S|C|1962
7TOS|1|23S|U|1963
7TOS|1|23S|G|1964
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain 16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain L02
- 50S ribosomal protein L2
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