IL_7TOS_143

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7TOS|1|23S|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_143 not in the Motif Atlas

Geometric match to IL_4WF9_080

Geometric discrepancy: 0.07

The information below is about IL_4WF9_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7TOS|1|23S|G|2067
7TOS|1|23S|U|2068
7TOS|1|23S|G|2069
*
7TOS|1|23S|C|2442
7TOS|1|23S|C|2443

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L15

50S ribosomal protein L15

Chain PR

PR20, ALS/FTD dipeptide repeat protein