IL_7TOS_153

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

7TOS|1|23S|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_153 not in the Motif Atlas

Geometric match to IL_9AXU_122

Geometric discrepancy: 0.384

The information below is about IL_9AXU_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7TOS|1|23S|U|2401
7TOS|1|23S|U|2402
7TOS|1|23S|C|2403
*
7TOS|1|23S|G|2414
7TOS|1|23S|G|2415

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15

Chain L33

50S ribosomal protein L33

Chain L35

50S ribosomal protein L35