IL_7TOS_157

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_157 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.1824

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7TOS|1|23S|A|2459
7TOS|1|23S|U|2460
7TOS|1|23S|A|2461
*
7TOS|1|23S|U|2489
7TOS|1|23S|G|2490
7TOS|1|23S|U|2491
7TOS|1|23S|U|2492
7TOS|1|23S|U|2493

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L16

50S ribosomal protein L16