IL_7TOS_170

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_170 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1797

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

7TOS|1|23S|C|2806
7TOS|1|23S|U|2807
7TOS|1|23S|G|2808
7TOS|1|23S|A|2809
7TOS|1|23S|A|2810
7TOS|1|23S|G|2811
*
7TOS|1|23S|C|2889
7TOS|1|23S|G|2890
7TOS|1|23S|U|2891
7TOS|1|23S|G|2892

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L32

50S ribosomal protein L32