IL_7TOS_172

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

7TOS|1|23S|A|2872, 7TOS|1|23S|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_172 not in the Motif Atlas

Geometric match to IL_5J7L_353

Geometric discrepancy: 0.1243

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7TOS|1|23S|G|2843
7TOS|1|23S|G|2844
7TOS|1|23S|U|2845
7TOS|1|23S|G|2846
*
7TOS|1|23S|C|2870
7TOS|1|23S|U|2871
7TOS|1|23S|A|2872
7TOS|1|23S|A|2873
7TOS|1|23S|C|2874

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L17

50S ribosomal protein L17

Chain L19

50S ribosomal protein L19