IL_7TOS_176

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_176 not in the Motif Atlas

Homologous match to IL_4V9F_103

Geometric discrepancy: 0.2682

The information below is about IL_4V9F_103

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

7TOS|1|5S|C|30
7TOS|1|5S|C|31
*
7TOS|1|5S|G|51
7TOS|1|5S|A|52
7TOS|1|5S|A|53
7TOS|1|5S|G|54

Current chains

Chain 5S

5S ribosomal RNA

Nearby chains

Chain L05

50S ribosomal protein L5

Chain L18

50S ribosomal protein L18