IL_7TOS_185

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7TOS|1|23S|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_185 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.2521

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOS|1|23S|G|1087
7TOS|1|23S|A|1088
7TOS|1|23S|A|1089
7TOS|1|23S|A|1090
7TOS|1|23S|G|1091
*
7TOS|1|23S|C|1100
7TOS|1|23S|U|1101
7TOS|1|23S|C|1102

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L11

50S ribosomal protein L11

Chain L36

50S ribosomal protein L36