IL_7TQL_014

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7TQL|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1417

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7TQL|1|2|G|145
7TQL|1|2|G|146
7TQL|1|2|A|147
7TQL|1|2|U|148
7TQL|1|2|A|149
7TQL|1|2|A|150
7TQL|1|2|C|151
*
7TQL|1|2|G|167
7TQL|1|2|C|168
7TQL|1|2|U|169
7TQL|1|2|A|170
7TQL|1|2|A|171
7TQL|1|2|U|172
7TQL|1|2|A|173
7TQL|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

Isoform 3 of 40S ribosomal protein S24