IL_7TQL_033

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_033 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.1105

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7TQL|1|2|A|599
7TQL|1|2|G|600
7TQL|1|2|G|601
7TQL|1|2|G|602
7TQL|1|2|C|603
7TQL|1|2|A|604
7TQL|1|2|A|605
7TQL|1|2|G|606
*
7TQL|1|2|C|636
7TQL|1|2|U|637

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain J

40S ribosomal protein S9

Chain e

ribosomal protein eS30