IL_7TQL_037

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7TQL|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_037 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1348

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7TQL|1|2|G|665
7TQL|1|2|U|666
7TQL|1|2|U|667
7TQL|1|2|A|668
7TQL|1|2|A|669
7TQL|1|2|A|670
7TQL|1|2|A|671
*
7TQL|1|2|U|1161
7TQL|1|2|C|1162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain c

40S ribosomal protein S26