IL_7TQL_057

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_057 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0896

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7TQL|1|2|G|1168
7TQL|1|2|G|1169
7TQL|1|2|A|1170
7TQL|1|2|G|1171
7TQL|1|2|U|1172
7TQL|1|2|A|1173
7TQL|1|2|U|1174
7TQL|1|2|G|1175
*
7TQL|1|2|U|1186
7TQL|1|2|G|1187
7TQL|1|2|A|1188
7TQL|1|2|A|1189
7TQL|1|2|A|1190
7TQL|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

ribosomal protein eL41