IL_7TQL_081

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_081 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.0995

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TQL|1|2|G|1702
7TQL|1|2|C|1703
7TQL|1|2|C|1704
7TQL|1|2|C|1705
*
7TQL|1|2|G|1829
7TQL|1|2|U|1830
7TQL|1|2|A|1831
7TQL|1|2|A|1832
7TQL|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 4

Translation initiation factor eIF1A

Chain h

ribosomal protein eL41