IL_7TQL_095

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUG*CCU

Length

7 nucleotides

Bulged bases

7TQL|1|2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_095 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2061

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7TQL|1|2|G|1324
7TQL|1|2|G|1325
7TQL|1|2|U|1326
7TQL|1|2|G|1327
*
7TQL|1|2|C|1502
7TQL|1|2|C|1503
7TQL|1|2|U|1504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S10

Chain f

ribosomal protein uS14