IL_7TQL_100

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

7TQL|1|2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_100 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2543

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7TQL|1|2|G|535
7TQL|1|2|A|536
7TQL|1|2|C|537
*
7TQL|1|2|G|546
7TQL|1|2|G|547
7TQL|1|2|C|548
7TQL|1|2|C|549

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

ribosomal protein eS30