IL_7TTU_016

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_016 not in the Motif Atlas

Geometric match to IL_4WF9_019

Geometric discrepancy: 0.1884

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TTU|1|1|U|649
7TTU|1|1|U|650
7TTU|1|1|A|651
7TTU|1|1|A|652
7TTU|1|1|G|653
*
7TTU|1|1|U|663
7TTU|1|1|G|664
7TTU|1|1|G|665
7TTU|1|1|A|666
7TTU|1|1|G|667

Current chains

Chain 1

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L4

Chain X

50S ribosomal protein L15