IL_7TTU_057

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7TTU|1|1|U|1828, 7TTU|1|1|U|1843, 7TTU|1|1|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_057 not in the Motif Atlas

Geometric match to IL_7A0S_065

Geometric discrepancy: 0.127

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7TTU|1|1|U|1825
7TTU|1|1|G|1826
7TTU|1|1|C|1827
7TTU|1|1|U|1828
7TTU|1|1|A|1829
7TTU|1|1|A|1830
7TTU|1|1|A|1831
*
7TTU|1|1|U|1840
7TTU|1|1|G|1841
7TTU|1|1|A|1842
7TTU|1|1|U|1843
7TTU|1|1|G|1844
7TTU|1|1|U|1845
7TTU|1|1|A|1846
7TTU|1|1|U|1847
7TTU|1|1|A|1848

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2