IL_7TTU_086

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_086 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1281

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7TTU|1|1|U|2679
7TTU|1|1|U|2680
7TTU|1|1|A|2681
7TTU|1|1|G|2682
7TTU|1|1|U|2683
7TTU|1|1|A|2684
7TTU|1|1|C|2685
*
7TTU|1|1|G|2690
7TTU|1|1|G|2691
7TTU|1|1|A|2692
7TTU|1|1|C|2693
7TTU|1|1|C|2694
7TTU|1|1|G|2695

Current chains

Chain 1

23S rRNA

Nearby chains