IL_7TTU_098

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

7TTU|1|1|A|489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_098 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.2657

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7TTU|1|1|G|35
7TTU|1|1|G|36
7TTU|1|1|C|37
*
7TTU|1|1|G|488
7TTU|1|1|A|489
7TTU|1|1|C|490
7TTU|1|1|C|491

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L20

Chain S

50S ribosomal protein L4