IL_7TUT_051

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_051 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.1142

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7TUT|1|K|C|1551
7TUT|1|K|G|1552
7TUT|1|K|A|1553
7TUT|1|K|A|1554
7TUT|1|K|G|1555
*
7TUT|1|K|U|1572
7TUT|1|K|G|1573
7TUT|1|K|G|1574
7TUT|1|K|A|1575
7TUT|1|K|G|1576

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Ribosomal protein L19

Chain p

eL43