IL_7TUT_064

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_064 not in the Motif Atlas

Geometric match to IL_8DP3_001

Geometric discrepancy: 0.3282

The information below is about IL_8DP3_001

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7TUT|1|K|G|1753
7TUT|1|K|U|1754
7TUT|1|K|C|1755
7TUT|1|K|U|1756
*
7TUT|1|K|A|1776
7TUT|1|K|C|1777

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain J

60S ribosomal protein L11