IL_7TUT_097

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7TUT|1|K|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_097 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.088

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TUT|1|K|C|2867
7TUT|1|K|G|2868
7TUT|1|K|U|2869
7TUT|1|K|A|2870
7TUT|1|K|A|2871
7TUT|1|K|C|2872
*
7TUT|1|K|G|2877
7TUT|1|K|G|2878
7TUT|1|K|A|2879
7TUT|1|K|U|2880
7TUT|1|K|A|2881
7TUT|1|K|A|2882
7TUT|1|K|G|2883

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain n

eL41

Chain p

eL43