IL_7TUT_108

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7TUT|1|K|A|3785, 7TUT|1|K|C|3791, 7TUT|1|K|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_108 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1275

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7TUT|1|K|C|3781
7TUT|1|K|C|3782
7TUT|1|K|A|3783
7TUT|1|K|A|3784
7TUT|1|K|A|3785
7TUT|1|K|U|3786
7TUT|1|K|G|3787
7TUT|1|K|C|3788
7TUT|1|K|C|3789
7TUT|1|K|U|3790
7TUT|1|K|C|3791
7TUT|1|K|G|3792
*
7TUT|1|K|C|3808
7TUT|1|K|G|3809
7TUT|1|K|C|3810
7TUT|1|K|G|3811

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain n

eL41