IL_7TUT_127

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7TUT|1|K|G|4522, 7TUT|1|K|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_127 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0742

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7TUT|1|K|C|4456
7TUT|1|K|U|4457
7TUT|1|K|C|4458
*
7TUT|1|K|G|4520
7TUT|1|K|U|4521
7TUT|1|K|G|4522
7TUT|1|K|A|4523
7TUT|1|K|G|4524

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain V

Ribosomal protein L23

Chain w

uL3