IL_7TUT_128

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7TUT|1|K|A|4518, 7TUT|1|K|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_128 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1031

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7TUT|1|K|C|4458
7TUT|1|K|U|4459
*
7TUT|1|K|A|4517
7TUT|1|K|A|4518
7TUT|1|K|C|4519
7TUT|1|K|G|4520

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain O

uL13

Chain V

Ribosomal protein L23

Chain w

uL3