IL_7TUT_144

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_144 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3766

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7TUT|1|K|G|4769
7TUT|1|K|U|4770
7TUT|1|K|C|4771
7TUT|1|K|C|4772
7TUT|1|K|C|4773
*
7TUT|1|K|G|4862
7TUT|1|K|G|4863
7TUT|1|K|U|4864
7TUT|1|K|C|4865

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13