IL_7TUT_154

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_154 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1942

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7TUT|1|K|A|5014
7TUT|1|K|G|5015
7TUT|1|K|A|5016
7TUT|1|K|G|5017
*
7TUT|1|K|C|5032
7TUT|1|K|G|5033
7TUT|1|K|A|5034
7TUT|1|K|U|5035

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19