IL_7U0H_034

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

7U0H|1|1|G|908, 7U0H|1|1|A|920, 7U0H|1|1|A|921, 7U0H|1|1|U|922

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U0H_034 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0969

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7U0H|1|1|G|907
7U0H|1|1|G|908
7U0H|1|1|G|909
*
7U0H|1|1|U|919
7U0H|1|1|A|920
7U0H|1|1|A|921
7U0H|1|1|U|922
7U0H|1|1|C|923

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain j

60S ribosomal protein L37-A

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase