IL_7U0H_055

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

7U0H|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U0H_055 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1621

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7U0H|1|1|U|1501
7U0H|1|1|C|1502
7U0H|1|1|A|1503
7U0H|1|1|A|1504
7U0H|1|1|C|1505
*
7U0H|1|1|G|1513
7U0H|1|1|G|1514
7U0H|1|1|A|1515

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A