IL_7U2I_208

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

7U2I|1|2A|U|1026, 7U2I|1|2A|A|1127, 7U2I|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2I_208 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.0564

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

7U2I|1|2A|G|1024
7U2I|1|2A|G|1025
7U2I|1|2A|U|1026
7U2I|1|2A|A|1027
7U2I|1|2A|A|1028
7U2I|1|2A|A|1029
7U2I|1|2A|G|1030
*
7U2I|1|2A|C|1124
7U2I|1|2A|G|1125
7U2I|1|2A|A|1126
7U2I|1|2A|A|1127
7U2I|1|2A|A|1128
7U2I|1|2A|A|1129
7U2I|1|2A|U|1130
7U2I|1|2A|G|1131
7U2I|1|2A|A|1132
7U2I|1|2A|U|1133
7U2I|1|2A|C|1135
7U2I|1|2A|G|1136
7U2I|1|2A|G|1137
7U2I|1|2A|G|1138
7U2I|1|2A|G|1139
7U2I|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16