3D structure

PDB id
7U2I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7U2I_306 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.2365
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7U2I|1|2a|U|605
7U2I|1|2a|G|606
7U2I|1|2a|A|607
7U2I|1|2a|A|608
7U2I|1|2a|A|609
7U2I|1|2a|G|610
7U2I|1|2a|A|611
7U2I|1|2a|C|612
*
7U2I|1|2a|G|628
7U2I|1|2a|G|629
7U2I|1|2a|G|630
7U2I|1|2a|G|631
7U2I|1|2a|A|632
7U2I|1|2a|G|633

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2d
30S ribosomal protein S4
Chain 2h
30S ribosomal protein S8
Chain 2p
30S ribosomal protein S16
Chain 2q
30S ribosomal protein S17

Coloring options:


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