IL_7U2J_021

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2J_021 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0355

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7U2J|1|1A|U|703
7U2J|1|1A|G|704
7U2J|1|1A|A|705
7U2J|1|1A|A|706
7U2J|1|1A|G|707
*
7U2J|1|1A|U|724
7U2J|1|1A|G|725
7U2J|1|1A|G|726
7U2J|1|1A|A|727
7U2J|1|1A|G|728

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2