IL_7U2J_085

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2J_085 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3923

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7U2J|1|1A|G|2124
7U2J|1|1A|G|2125
7U2J|1|1A|A|2126
7U2J|1|1A|G|2127
*
7U2J|1|1A|C|2161
7U2J|1|1A|G|2162
7U2J|1|1A|C|2163
7U2J|1|1A|C|2164
7U2J|1|1A|G|2165
7U2J|1|1A|G|2166
7U2J|1|1A|U|2167
7U2J|1|1A|G|2168
7U2J|1|1A|A|2169
7U2J|1|1A|A|2170
7U2J|1|1A|A|2171
7U2J|1|1A|U|2172
7U2J|1|1A|A|2173
7U2J|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA